To make a prediction with ARES, submit a Rosetta 'silent file' or a PDB file containing candidate structural models (not both!), and ARES will output a single score (lower is better) for each model in the submitted file. Here is an example of a PDB file containing two structural models.
For more details on ARES, please check out our paper!

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[either] Rosetta 'silent file':
[or] PDB file:

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